♦ January 2024-now: computational drug design and machine learning in Santero Therapeutics
♦ Apr. 2019 -November 2023, PhD computational drug design: thermodynamic and kinetic binding free energy calculations of ligands against adenosine A3 receptor
Education:
♦ Januart 2024 - now, post-doc, Max-Planck Institute, Gottingen, ssNMR experiments with influenza A M2 protein (Professor Loren Adreaas)
♦Apr 2020 - December 2023, PhD
(a) design with MD and TI/MD simulations and synthesis of new inihibitors of MmpL3 transporter against tuberculosis (Pharmacy NKUA);
(b) February 2022-June 2023 contract with Max-Planck Institute, Gottingen, Germany for solid state (ss) NMR experiments with influenza A M2 protein (Loren Adreaas).
♦ 2017-2019, MRes in synthesis of SQ109 analogs against Mtb (A. Kolocouris)
♦ 2012-2017, MPharm with project thesis is synthesis of amantadine analogs against influenza A (A. Kolocouris)
♦ Skills: Organic synthesis, drug design & synthesis, binding free energy calculations, ssNMR
E-mail: marianstamp@pharm.uoa.gr
♦ September 2022-now: IFET
Education:
♦ June 2019-2022, postdoc researcher, Theranostics against prostate cancer, Lab of Medicinal Chemistry, Department of Pharmacy, NKUA and Institute Democritos, Email: liolios.xr@gmail.com
♦ 2014-2018, Post-Doc Chemical biology: Theranostics against various types of cancer, PET/SPECT Molecular imaging (German Cancer Research Center, DKFZ, Heidelberg, Germany)
♦ 2013, PhD Theranostics for Prostate cancer, PET/SPECT Molecular imaging, Pharmacology, Med. Chemistry, (Pharmacy, Univ. Patras & N.C.S.R. “Demokritos”, Greece)
♦ 2005, MSc Natural Products-Pharmacognosy, (Pharmacy, NKUA, Greece)
♦ 2003, MPharm (NKUA, Greece )
♦ Skills: Bioconjugates, Solid Phase Peptide Synthesis, Organic Synthesis, Pharmacology (in vitro, in vivo assays)
♦ 09/2020-06/2023: computational drug design in Novamechanics
♦ 09/2015 -7/2020: PhD in computational drug design and computational biochemistry against adenosine receptors (A. Kolocouris)
♦ 2013-2014: MSc in computational drug design, Chemistry, UCL, UK
♦ 2008-2012: Degree (equivalent to MSc) in Molecular Biology and Genetics, Democritus University of Thrace
♦ Skills obtained from PhD thesis: Virtual Screening, MD simulations, MM-PBSA calculations
E-mail: panagiotislagarias@gmail.com
♦ PhD student in K. Loland lab, Copenhagen; February 2021-now; structural biology, molecular pharmacology and computational biochemistry of transporters
♦ MRes in Biophysics (binding and NMR studies of protein-DNA complexes) with S. Shamas and C. Redfield, Biochemistry, Oxford (Oct. 2019 - Jan. 2021)
♦ 2019 MPharm, NKUA
Project thesis in MD simulations of influenza A M2 protein with A. Kolocouris (April 2019-July 2019)
♦ Internship coarse-grained MD simulations of membrane proteins aggregation in Biochemistry with M. Sansom lab Biochemistry, Oxford in collaboration with A. Kolocouris (Nov. 2018-April 2019)
♦ Skills obtained during project thesis and internship: Docking calculations, atomistic and coarse-grained MD simulations (Desmond, Gromacs)
E-mail: iriskalen@gmail.com; iris.kalenderoglou@sund.ku.dk
♦ PhD student in Jonathan Essex lab (Chemistry, Southampron) (October 2019-now)
♦ Master in Computational Drug design and Computational Biochemistry Nov. 2017 - Aug. 2019 (Supervisor: A. Kolocouris, NKUA)
♦ 2017 M. Pharm (NKUA).
Skills: Docking and MD simulations
Project: In silico drug design and binding understanding of novel selective inhibitors of adenosine receptor using docking and MD simulations, cheminformatics.
E-mail: distamatis@hotmail.com
♦ Post-Doctoral Scholar (Apr. 2017 - March 2019, Supervisor: A. Kolocouris, NKUA)
♦ 2016 Ph.D. in Organic Chemistry (Chemistry, NKUA)
♦ 2012 Master in Organic Synthesis and its Applications in Chemical Industry (Chemistry, NKUA)
♦ 2010 Degree equivalent to M.Sc in Chemistry (NKUA)
Skills: 3D-QSAR, MD Simulations
Project: In silico drug design of novel pharmaceutical molecules as selective inhibitors of adenosine receptors.
E-mail: evrontaki@pharm.uoa.gr
Education:
♦ 01/2024-today : post-doc, Biochemistry, Copenhagen, structural biology of SLC transporters
♦ 01/2023-12/2024: post-doc Biochemistry, Oxford, substrate identification of orphan SLC transportet using biochemical and biophysical assays and binding of cholesterols using labels (S. Newstead)
♦ 10/2019-01/2023: PhD Biochemistry, Oxford, cryo-EM structure determination of an SLC transporter and computational biophysics of the interactions with cholesterol (Simon Newstead)
♦ Graduate researcher in atomistic MD simulations of membrane and soluble proteins with A. Kolocouris (June 2017 - 2019)
♦ Degree in Pharmacy (MPharm) (2012-2017)
Project thesis in pharmacology with I. Andreadou (western blot, mice models)
E-mail: dimitris.kolokouris@gmail.com
Ph.D. student (Feb. 2014 - 2018)
E-mail: tzitzo@pharm.uoa.gr
Education:
♦ 2014 Master's (two years) in Medicinal Chemistry (University of Athens)
♦ 2011 B.Sc in Chemistry (University of Athens)
Skills: Ligands and peptide synthesis, FEP calculations, MD simulations
Project: Design and synthesis and unraveling binding properties of aminoadamantane ligands and their polar head targeting at influenza M2 WT, S31N ion channel proteins and other amantadine resistant mutants.
♦ 2015-2022, PhD in Julien Michel lab (Chemistry, Edinburgh, YK) in biophysics of cyclophilin-inhibitors complexes
♦ 2012-2014, MRes in synthesis of influenza A M2TM peptides and FEP/MD simulations of compounds against influenza A M2 protein (Supervisors A. Kolocouris, Pharmacy NKUA, Z. Cournia, BBRFA)
♦ 2011 Degree in Chemistry (MSc equivalent, NKUA), with a project thesis in organic synthesis
E-mail: harris.ioannidis@hotmail.gr
Skills: MD simulations, FEP/MD calculations, peptide synthesis, biophysics
♦ 1st October 2021-1st October 2023 | Postdoctoral Fellow, Development of traceless affinity tags for labelling Bruton's Tyrosine Kinase | Department of Chemistry and Molecular Biology, University of Gothenburg, Sweden, Prof. Dr. Morten Grøtli, Industrial secondment: AstraZeneca | |
♦ 29th May-29th September 2021 | Research associate | Department of Biology, University of Minho, Braga, Portugal, Prof. Rui Oliveira, Prof. Alberto Dias | |
♦ 1st January-31st September 2021 | Researcher – Computational Chemistry and Drug Design | NovaMechanics Ltd., Nicosia, Cyprus. CEO: Dr. Antreas Afantitis | |
♦ 27th July 2018-1st December 2018 | Research associate | Institute of Metabolism and Systems Research, College of Medical and Dental Sciences, University of Birmingham, Prof. Dr. Davide Calebiro | |
♦ 1st December 2014-June 2020 | PhD thesis, “Opioid receptor oligomerization study through fluorescent selective ligands”.
| Institute of Pharmacy and Food Chemistry, University of Würzburg, Germany, Prof. Dr. Michael Decker | |
♦ October 2012 -November 2014 | 2-year Postgraduate Degree (M.Res) in Synthetic Pharmaceutical Chemistry. Postgraduate thesis project: “Alchemical calculations of binding free energies and measurements of binding affinities of aminoadamantane ligands against the transmembrane pore of the Influenza A M2 protein. Application on in silico design and synthesis of effective aminoadamantane derivatives”. Grade: “Excellent”, 9/10 | Laboratory of Medicinal and Computational Chemistry, Faculty of Pharmacy, University of Athens, Greece. Supervisor: Prof. Dr. Antonios Kolocouris | |
♦ September 2012 | License to practice Pharmacy – EEA valid | ||
♦ October 2005-December 2011 | 5-year Diploma of Pharmacy (MSc integrated), National and Kapodistrian University of Athens, Greece. Grade: “Very Good”, 7/10 | ||
E-mail: drakopoulosantonis[at]gmail[dot]com
Skills: computational drug design, ligands synthesis, synthesis of ligand - fluorescence probes, one molecule microscopy studies of receptors dimerization
Education:
Skills: Bioconjugates, solid phase peptide synthesis, organic synthesis
November 2019-November 2021, post-doc researcher: Computational mechanistic organic chemistry. DFT calculations of gold -catalyzed reaction mechanisms (Lab of Medicinal Chemistry, Department of Pharmacy, NKUA).
2016-2018, post-doc researcher: Molecular dynamics simulations of flexible macromolecules in electrostatic field (Department of Chemistry, NKUA).
Education:
2016 PhD: Molecular dynamics simulations of flexible macromolecules in electrostatic field (Department of Chemistry, NKUA).
2008 MRes: Thermodynamic properties and interactions of amphiphile molecules in aqueous amino acids solutions (Department of Chemistry, NKUA).
Skills: MD simulations, Computational mechanistic organic chemistry – DFT calculations in gold catalyzed reactions.
Email: iraklis.litinas@gmail.com
